J3_9GUL_022

3D structure

PDB id

9GUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9GUL|1|L5|U|4882, 9GUL|1|L5|A|4938, 9GUL|1|L5|C|4940, 9GUL|1|L5|A|4943, 9GUL|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GUL|1|L5|G|4751
9GUL|1|L5|U|4752
9GUL|1|L5|U|4753
9GUL|1|L5|G|4754
*
9GUL|1|L5|C|4879
9GUL|1|L5|C|4880
9GUL|1|L5|U|4881
9GUL|1|L5|U|4882
9GUL|1|L5|C|4883
*
9GUL|1|L5|G|4936
9GUL|1|L5|C|4937
9GUL|1|L5|A|4938
9GUL|1|L5|C|4939
9GUL|1|L5|C|4940
9GUL|1|L5|G|4941
9GUL|1|L5|C|4942
9GUL|1|L5|A|4943
9GUL|1|L5|C|4944
9GUL|1|L5|G|4945
9GUL|1|L5|U|4946
9GUL|1|L5|U|4947
9GUL|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a