J3_9GUP_005
3D structure
- PDB id
- 9GUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S mRNA delivery complex (open head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 9GUP|1|A|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GUP_005 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.0912
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9GUP|1|A|U|672
9GUP|1|A|A|673
*
9GUP|1|A|U|717
9GUP|1|A|A|718
9GUP|1|A|C|719
9GUP|1|A|C|720
9GUP|1|A|G|721
9GUP|1|A|G|722
9GUP|1|A|U|723
9GUP|1|A|G|724
9GUP|1|A|G|725
*
9GUP|1|A|C|732
9GUP|1|A|G|733
9GUP|1|A|G|734
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- Small ribosomal subunit protein bS6
- Chain L
- 30S ribosomal protein S11
- Chain P
- Small ribosomal subunit protein uS15
- Chain S
- 30S ribosomal protein S18
- Chain V
- 30S ribosomal protein S21
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