3D structure

PDB id
9GUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S PIC (Pre-Initiation complex)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
9GUQ|1|A|A|975, 9GUQ|1|A|G|976, 9GUQ|1|A|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GUQ_009 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.0812
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

9GUQ|1|A|U|955
9GUQ|1|A|U|956
9GUQ|1|A|U|957
9GUQ|1|A|A|958
9GUQ|1|A|A|959
9GUQ|1|A|U|960
9GUQ|1|A|U|961
9GUQ|1|A|C|962
*
9GUQ|1|A|G|973
9GUQ|1|A|A|974
9GUQ|1|A|A|975
9GUQ|1|A|G|976
9GUQ|1|A|A|977
9GUQ|1|A|A|978
9GUQ|1|A|C|979
9GUQ|1|A|C|980
9GUQ|1|A|U|981
9GUQ|1|A|U|982
9GUQ|1|A|A|983
9GUQ|1|A|C|984
*
9GUQ|1|A|G|1221
9GUQ|1|A|G|1222
9GUQ|1|A|C|1223
9GUQ|1|A|U|1224
9GUQ|1|A|A|1225

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain K
30S ribosomal protein S10
Chain N
30S ribosomal protein S13
Chain O
30S ribosomal protein S14
Chain T
30S ribosomal protein S19

Coloring options:


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