J3_9GUS_004

3D structure

PDB id

9GUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex TEC resolved (30S only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGG*CUUGA*UGACG

Length

13 nucleotides

Bulged bases

9GUS|1|A|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GUS_004 not in the Motif Atlas

Homologous match to J3_4LFB_015

Geometric discrepancy: 0.1061

The information below is about J3_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.4

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9GUS|1|A|C|586
9GUS|1|A|G|587
9GUS|1|A|G|588
*
9GUS|1|A|C|651
9GUS|1|A|U|652
9GUS|1|A|U|653
9GUS|1|A|G|654
9GUS|1|A|A|655
*
9GUS|1|A|U|751
9GUS|1|A|G|752
9GUS|1|A|A|753
9GUS|1|A|C|754
9GUS|1|A|G|755

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S8

Chain M

30S ribosomal protein S12

Chain P

Small ribosomal subunit protein uS15

Chain R

30S ribosomal protein S17