3D structure

PDB id
9GUS (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S mRNA delivery complex TEC resolved (30S only)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
9GUS|1|A|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GUS_005 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.0824
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

9GUS|1|A|U|672
9GUS|1|A|A|673
*
9GUS|1|A|U|717
9GUS|1|A|A|718
9GUS|1|A|C|719
9GUS|1|A|C|720
9GUS|1|A|G|721
9GUS|1|A|G|722
9GUS|1|A|U|723
9GUS|1|A|G|724
9GUS|1|A|G|725
*
9GUS|1|A|C|732
9GUS|1|A|G|733
9GUS|1|A|G|734

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain G
Small ribosomal subunit protein bS6
Chain L
30S ribosomal protein S11
Chain P
Small ribosomal subunit protein uS15
Chain S
30S ribosomal protein S18
Chain V
30S ribosomal protein S21

Coloring options:


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