J3_9GUS_009

3D structure

PDB id

9GUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex TEC resolved (30S only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCUA

Length

25 nucleotides

Bulged bases

9GUS|1|A|A|975, 9GUS|1|A|G|976, 9GUS|1|A|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GUS_009 not in the Motif Atlas

Homologous match to J3_5J7L_006

Geometric discrepancy: 0.0882

The information below is about J3_5J7L_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9GUS|1|A|U|955
9GUS|1|A|U|956
9GUS|1|A|U|957
9GUS|1|A|A|958
9GUS|1|A|A|959
9GUS|1|A|U|960
9GUS|1|A|U|961
9GUS|1|A|C|962
*
9GUS|1|A|G|973
9GUS|1|A|A|974
9GUS|1|A|A|975
9GUS|1|A|G|976
9GUS|1|A|A|977
9GUS|1|A|A|978
9GUS|1|A|C|979
9GUS|1|A|C|980
9GUS|1|A|U|981
9GUS|1|A|U|982
9GUS|1|A|A|983
9GUS|1|A|C|984
*
9GUS|1|A|G|1221
9GUS|1|A|G|1222
9GUS|1|A|C|1223
9GUS|1|A|U|1224
9GUS|1|A|A|1225

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S10

Chain N

30S ribosomal protein S13

Chain O

30S ribosomal protein S14

Chain T

30S ribosomal protein S19