J3_9GUU_017

3D structure

PDB id

9GUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (consensus)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9GUU|1|A|U|1240, 9GUU|1|A|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GUU_017 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1177

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

9GUU|1|A|C|1237
9GUU|1|A|A|1238
9GUU|1|A|A|1239
9GUU|1|A|U|1240
9GUU|1|A|G|1241
*
9GUU|1|A|C|1296
9GUU|1|A|G|1297
9GUU|1|A|U|1298
9GUU|1|A|A|1299
9GUU|1|A|G|1300
9GUU|1|A|U|1301
9GUU|1|A|C|1302
9GUU|1|A|C|1303
*
9GUU|1|A|G|1334
9GUU|1|A|U|1335
9GUU|1|A|C|1336
9GUU|1|A|G|1337

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain N

30S ribosomal protein S13