J3_9GUW_017

3D structure

PDB id

9GUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-TEC (TEC in expressome position) Inactive state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9GUW|1|A|U|1240, 9GUW|1|A|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GUW_017 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1475

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9GUW|1|A|C|1237
9GUW|1|A|A|1238
9GUW|1|A|A|1239
9GUW|1|A|U|1240
9GUW|1|A|G|1241
*
9GUW|1|A|C|1296
9GUW|1|A|G|1297
9GUW|1|A|U|1298
9GUW|1|A|A|1299
9GUW|1|A|G|1300
9GUW|1|A|U|1301
9GUW|1|A|C|1302
9GUW|1|A|C|1303
*
9GUW|1|A|G|1334
9GUW|1|A|U|1335
9GUW|1|A|C|1336
9GUW|1|A|G|1337

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain N

30S ribosomal protein S13