3D structure

PDB id
9GUX (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S-TEC (TEC in expressome position) Inactive state 1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
9GUX|1|A|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GUX_005 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.1017
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

9GUX|1|A|U|672
9GUX|1|A|A|673
*
9GUX|1|A|U|717
9GUX|1|A|A|718
9GUX|1|A|C|719
9GUX|1|A|C|720
9GUX|1|A|G|721
9GUX|1|A|G|722
9GUX|1|A|U|723
9GUX|1|A|G|724
9GUX|1|A|G|725
*
9GUX|1|A|C|732
9GUX|1|A|G|733
9GUX|1|A|G|734

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain G
Small ribosomal subunit protein bS6
Chain L
30S ribosomal protein S11
Chain P
Small ribosomal subunit protein uS15
Chain S
30S ribosomal protein S18
Chain V
30S ribosomal protein S21

Coloring options:


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