J3_9GXX_009
3D structure
- PDB id
- 9GXX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.61 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9GXX|1|A|A|975, 9GXX|1|A|G|976, 9GXX|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GXX_009 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.065
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9GXX|1|A|U|955
9GXX|1|A|U|956
9GXX|1|A|U|957
9GXX|1|A|A|958
9GXX|1|A|A|959
9GXX|1|A|U|960
9GXX|1|A|U|961
9GXX|1|A|C|962
*
9GXX|1|A|G|973
9GXX|1|A|A|974
9GXX|1|A|A|975
9GXX|1|A|G|976
9GXX|1|A|A|977
9GXX|1|A|A|978
9GXX|1|A|C|979
9GXX|1|A|C|980
9GXX|1|A|U|981
9GXX|1|A|U|982
9GXX|1|A|A|983
9GXX|1|A|C|984
*
9GXX|1|A|G|1221
9GXX|1|A|G|1222
9GXX|1|A|C|1223
9GXX|1|A|U|1224
9GXX|1|A|A|1225
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain J
- Small ribosomal subunit protein uS10
- Chain M
- Small ribosomal subunit protein uS13
- Chain N
- Small ribosomal subunit protein uS14
- Chain S
- Small ribosomal subunit protein uS19
- Chain Y
- Transfer RNA; tRNA
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