3D structure

PDB id
9GXX (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.61 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
9GXX|1|A|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GXX_016 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.1105
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_40706.1
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

9GXX|1|A|U|1116
9GXX|1|A|A|1117
9GXX|1|A|U|1118
*
9GXX|1|A|A|1155
9GXX|1|A|G|1156
9GXX|1|A|A|1157
9GXX|1|A|C|1158
9GXX|1|A|U|1159
9GXX|1|A|G|1160
9GXX|1|A|C|1161
*
9GXX|1|A|G|1175
9GXX|1|A|A|1176
9GXX|1|A|G|1177
9GXX|1|A|G|1178
9GXX|1|A|A|1179
9GXX|1|A|A|1180
9GXX|1|A|G|1181
9GXX|1|A|G|1182
9GXX|1|A|U|1183
9GXX|1|A|G|1184

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
Small ribosomal subunit protein uS2
Chain G
Small ribosomal subunit protein uS7
Chain I
Small ribosomal subunit protein uS9
Chain J
Small ribosomal subunit protein uS10
Chain N
Small ribosomal subunit protein uS14

Coloring options:


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