J3_9GXX_035
3D structure
- PDB id
- 9GXX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.61 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 9GXX|1|a|U|2833, 9GXX|1|a|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GXX_035 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1228
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
9GXX|1|a|G|2812
9GXX|1|a|A|2813
9GXX|1|a|A|2814
9GXX|1|a|C|2815
*
9GXX|1|a|G|2831
9GXX|1|a|U|2832
9GXX|1|a|U|2833
9GXX|1|a|G|2834
9GXX|1|a|A|2835
9GXX|1|a|U|2836
*
9GXX|1|a|A|2882
9GXX|1|a|A|2883
9GXX|1|a|U|2884
9GXX|1|a|G|2885
9GXX|1|a|A|2886
9GXX|1|a|A|2887
9GXX|1|a|C|2888
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
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