J3_9GY4_010
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 9GY4|1|5|A|1805, 9GY4|1|5|U|1834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GY4_010 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.4137
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9GY4|1|5|U|1726
9GY4|1|5|U|1727
*
9GY4|1|5|A|1802
9GY4|1|5|G|1803
9GY4|1|5|A|1804
9GY4|1|5|A|1805
9GY4|1|5|G|1806
*
9GY4|1|5|C|1832
9GY4|1|5|G|1833
9GY4|1|5|U|1834
9GY4|1|5|G|1835
9GY4|1|5|G|1836
9GY4|1|5|A|1837
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL30
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
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