J3_9GY4_013
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9GY4|1|5|U|2788, 9GY4|1|5|A|2789, 9GY4|1|5|U|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GY4_013 not in the Motif Atlas
- Homologous match to J3_8CRE_014
- Geometric discrepancy: 0.0706
- The information below is about J3_8CRE_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
9GY4|1|5|G|2402
9GY4|1|5|A|2403
9GY4|1|5|A|2404
9GY4|1|5|G|2405
*
9GY4|1|5|C|2785
9GY4|1|5|C|2786
9GY4|1|5|A|2787
9GY4|1|5|U|2788
9GY4|1|5|A|2789
9GY4|1|5|U|2790
9GY4|1|5|C|2791
*
9GY4|1|5|G|2800
9GY4|1|5|U|2801
9GY4|1|5|C|2802
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Lg
- 60S ribosomal protein L34
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
Coloring options: