J3_9GY4_018
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GY4_018 not in the Motif Atlas
- Homologous match to J3_8CRE_018
- Geometric discrepancy: 0.1604
- The information below is about J3_8CRE_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12393.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9GY4|1|5|A|2598
9GY4|1|5|G|2599
9GY4|1|5|A|2600
9GY4|1|5|A|2601
9GY4|1|5|G|2602
*
9GY4|1|5|C|2737
9GY4|1|5|C|2738
*
9GY4|1|5|G|2742
9GY4|1|5|A|2743
9GY4|1|5|A|2744
9GY4|1|5|A|2745
9GY4|1|5|A|2746
9GY4|1|5|U|2747
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
- Chain a
- 60S ribosomal protein L8
Coloring options: