J3_9GY4_019
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 9GY4|1|5|G|4076
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GY4_019 not in the Motif Atlas
- Geometric match to J3_5J7L_044
- Geometric discrepancy: 0.1309
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
9GY4|1|5|C|3937
9GY4|1|5|G|3938
9GY4|1|5|G|3939
*
9GY4|1|5|C|4074
9GY4|1|5|U|4075
9GY4|1|5|G|4076
9GY4|1|5|A|4077
9GY4|1|5|C|4078
*
9GY4|1|5|G|4168
9GY4|1|5|G|4169
9GY4|1|5|A|4170
9GY4|1|5|C|4171
9GY4|1|5|A|4172
9GY4|1|5|G|4173
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
- Chain a
- 60S ribosomal protein L8
Coloring options: