J3_9GY4_020
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 9GY4|1|5|C|4116, 9GY4|1|5|U|4117, 9GY4|1|5|U|4118, 9GY4|1|5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GY4_020 not in the Motif Atlas
- Homologous match to J3_8CRE_020
- Geometric discrepancy: 0.2733
- The information below is about J3_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9GY4|1|5|G|4091
9GY4|1|5|G|4092
9GY4|1|5|G|4093
9GY4|1|5|G|4094
*
9GY4|1|5|C|4114
9GY4|1|5|G|4115
9GY4|1|5|C|4116
9GY4|1|5|U|4117
9GY4|1|5|U|4118
9GY4|1|5|C|4119
9GY4|1|5|U|4120
9GY4|1|5|G|4121
9GY4|1|5|G|4122
9GY4|1|5|C|4123
9GY4|1|5|G|4124
9GY4|1|5|C|4125
9GY4|1|5|C|4126
9GY4|1|5|A|4127
9GY4|1|5|A|4128
9GY4|1|5|G|4129
*
9GY4|1|5|C|4155
9GY4|1|5|G|4156
9GY4|1|5|A|4157
9GY4|1|5|C|4158
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L7a
- Chain LX
- 60S ribosomal protein L23a
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
- Chain a
- 60S ribosomal protein L8
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