J3_9GY4_024
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUUG*CCUUC*GCACCGCACGUUC
- Length
- 22 nucleotides
- Bulged bases
- 9GY4|1|5|U|4882, 9GY4|1|5|A|4938, 9GY4|1|5|C|4940, 9GY4|1|5|A|4943, 9GY4|1|5|C|4944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9GY4|1|5|G|4751
9GY4|1|5|U|4752
9GY4|1|5|U|4753
9GY4|1|5|G|4754
*
9GY4|1|5|C|4879
9GY4|1|5|C|4880
9GY4|1|5|U|4881
9GY4|1|5|U|4882
9GY4|1|5|C|4883
*
9GY4|1|5|G|4936
9GY4|1|5|C|4937
9GY4|1|5|A|4938
9GY4|1|5|C|4939
9GY4|1|5|C|4940
9GY4|1|5|G|4941
9GY4|1|5|C|4942
9GY4|1|5|A|4943
9GY4|1|5|C|4944
9GY4|1|5|G|4945
9GY4|1|5|U|4946
9GY4|1|5|U|4947
9GY4|1|5|C|4948
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LE
- Large ribosomal subunit protein eL6
- Chain LM
- 60S ribosomal protein L14
- Chain LO
- 60S ribosomal protein L13a
- Chain Lf
- 60S ribosomal protein L35a
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