J3_9H0L_018

3D structure

PDB id

9H0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H0L_018 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0582

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

9H0L|1|a|G|30
9H0L|1|a|C|31
*
9H0L|1|a|G|474
9H0L|1|a|C|475
9H0L|1|a|G|476
9H0L|1|a|A|477
9H0L|1|a|A|478
9H0L|1|a|A|479
9H0L|1|a|A|480
9H0L|1|a|G|481
*
9H0L|1|a|C|509
9H0L|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20

Chain t

Large ribosomal subunit protein uL24