J3_9H3G_001

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

AU*AUGAAAAG*CU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9H3G|1|3|A|23
9H3G|1|3|U|24
*
9H3G|1|A|A|366
9H3G|1|A|U|367
9H3G|1|A|G|368
9H3G|1|A|A|369
9H3G|1|A|A|370
9H3G|1|A|A|371
9H3G|1|A|A|372
9H3G|1|A|G|373
*
9H3G|1|A|C|400
9H3G|1|A|U|401

Current chains

Chain 3

Ribosomal RNA 5.8S

Chain A

Ribosomal RNA 25S

Nearby chains

Chain BA

Large ribosomal subunit protein eL39z/eL39x

Chain BO

Large ribosomal subunit protein uL24z

Chain BT

Large ribosomal subunit protein uL4z