J3_9H3G_003
3D structure
- PDB id
- 9H3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.82 Å
Loop
- Sequence
- CUCG*CGAUAGCGAACAAGUAC*GUAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9H3G|1|3|C|27, 9H3G|1|A|U|340, 9H3G|1|A|A|348
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9H3G|1|3|C|25
9H3G|1|3|U|26
9H3G|1|3|C|27
9H3G|1|3|G|28
*
9H3G|1|A|C|337
9H3G|1|A|G|338
9H3G|1|A|A|339
9H3G|1|A|U|340
9H3G|1|A|A|341
9H3G|1|A|G|342
9H3G|1|A|C|343
9H3G|1|A|G|344
9H3G|1|A|A|345
9H3G|1|A|A|346
9H3G|1|A|C|347
9H3G|1|A|A|348
9H3G|1|A|A|349
9H3G|1|A|G|350
9H3G|1|A|U|351
9H3G|1|A|A|352
9H3G|1|A|C|353
*
9H3G|1|A|G|360
9H3G|1|A|U|361
9H3G|1|A|A|362
9H3G|1|A|A|363
9H3G|1|A|A|364
9H3G|1|A|G|365
Current chains
- Chain 3
- Ribosomal RNA 5.8S
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain AY
- Large ribosomal subunit protein eL37z
- Chain BA
- Large ribosomal subunit protein eL39z/eL39x
- Chain BO
- Large ribosomal subunit protein uL24z
- Chain BT
- Large ribosomal subunit protein uL4z
- Chain L3
- Nascent polypeptide (poly-A)
Coloring options: