J3_9H3G_012

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

UGA(A2M)C(PSU)A*UAG*CGAA

Length

14 nucleotides

Bulged bases

9H3G|1|A|A2M|826, 9H3G|1|A|G|933, 9H3G|1|A|A|934

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

9H3G|1|A|U|823
9H3G|1|A|G|824
9H3G|1|A|A|825
9H3G|1|A|A2M|826
9H3G|1|A|C|827
9H3G|1|A|PSU|828
9H3G|1|A|A|829
*
9H3G|1|A|U|914
9H3G|1|A|A|915
9H3G|1|A|G|916
*
9H3G|1|A|C|932
9H3G|1|A|G|933
9H3G|1|A|A|934
9H3G|1|A|A|935

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AY

Large ribosomal subunit protein eL37z

Chain BA

Large ribosomal subunit protein eL39z/eL39x

Chain BQ

Large ribosomal subunit protein uL2z

Chain Ea

Large ribosomal subunit protein eL15z