J3_9H3G_013

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

CGG*CGCAG*(PSU)CUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9H3G|1|A|C|838
9H3G|1|A|G|839
9H3G|1|A|G|840
*
9H3G|1|A|C|872
9H3G|1|A|G|873
9H3G|1|A|C|874
9H3G|1|A|A|875
9H3G|1|A|G|876
*
9H3G|1|A|PSU|901
9H3G|1|A|C|902
9H3G|1|A|U|903
9H3G|1|A|G|904

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AK

Large ribosomal subunit protein eL19x

Chain BE

Large ribosomal subunit protein eL43y

Chain BQ

Large ribosomal subunit protein uL2z

Chain Fa

Large ribosomal subunit protein eL34z