J3_9H3G_017

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

UCGAUC*GGGAU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9H3G|1|A|U|1535
9H3G|1|A|C|1536
9H3G|1|A|G|1537
9H3G|1|A|A|1538
9H3G|1|A|U|1539
9H3G|1|A|C|1540
*
9H3G|1|A|G|1592
9H3G|1|A|G|1593
9H3G|1|A|G|1594
9H3G|1|A|A|1595
9H3G|1|A|U|1596
*
9H3G|1|A|A|1613
9H3G|1|A|A|1614

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain AZ

Large ribosomal subunit protein eL38z/eL38y

Chain BA

Large ribosomal subunit protein eL39z/eL39x

Chain BN

Large ribosomal subunit protein uL23y

Chain Fa

Large ribosomal subunit protein eL34z