Loop J3_9H3G

3D structure

PDB id: 9H3G (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 1.82 Å

Loop

Sequence: GAUUGCCG*CACGUGUCGUUG*CUUGAAUUAUAAUUACCACC
Length: 40 nucleotides
Bulged bases: 9H3G|1|A|U|3166, 9H3G|1|A|G|3167, 9H3G|1|A|U|3206, 9H3G|1|A|A|3254, 9H3G|1|A|U|3256, 9H3G|1|A|U|3258, 9H3G|1|A|U|3262
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9H3G|1|A|G|3163
9H3G|1|A|A|3164
9H3G|1|A|U|3165
9H3G|1|A|U|3166
9H3G|1|A|G|3167
9H3G|1|A|C|3168
9H3G|1|A|C|3169
9H3G|1|A|G|3170
*
9H3G|1|A|C|3200
9H3G|1|A|A|3201
9H3G|1|A|C|3202
9H3G|1|A|G|3203
9H3G|1|A|U|3204
9H3G|1|A|G|3205
9H3G|1|A|U|3206
9H3G|1|A|C|3207
9H3G|1|A|G|3208
9H3G|1|A|U|3209
9H3G|1|A|U|3210
9H3G|1|A|G|3211
*
9H3G|1|A|C|3249
9H3G|1|A|U|3250
9H3G|1|A|U|3251
9H3G|1|A|G|3252
9H3G|1|A|A|3253
9H3G|1|A|A|3254
9H3G|1|A|U|3255
9H3G|1|A|U|3256
9H3G|1|A|A|3257
9H3G|1|A|U|3258
9H3G|1|A|A|3259
9H3G|1|A|A|3260
9H3G|1|A|U|3261
9H3G|1|A|U|3262
9H3G|1|A|A|3263
9H3G|1|A|C|3264
9H3G|1|A|C|3265
9H3G|1|A|A|3266
9H3G|1|A|C|3267
9H3G|1|A|C|3268

Current chains

Chain A: Ribosomal RNA 25S

Nearby chains

Chain AH: Large ribosomal subunit protein eL14y
Chain AW: Large ribosomal subunit protein eL33y
Chain BF: Large ribosomal subunit protein eL6y
Chain BH: Large ribosomal subunit protein uL13y

J3_9H3G_025