J3_9H3K_003

3D structure

PDB id

9H3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor d126_(L29)-/(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

9H3K|1|A|U|72, 9H3K|1|A|A|74

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3K_003 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.169

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

9H3K|1|A|A|56
9H3K|1|A|C|57
*
9H3K|1|A|G|70
9H3K|1|A|A|71
9H3K|1|A|U|72
9H3K|1|A|A|73
9H3K|1|A|A|74
9H3K|1|A|G|75
9H3K|1|A|C|76
*
9H3K|1|A|G|110
9H3K|1|A|A|111
9H3K|1|A|U|112
9H3K|1|A|U|113
9H3K|1|A|U|114

Current chains

Chain A

23S ribosomal RNA

Nearby chains