J3_9H3O_004

3D structure

PDB id

9H3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-_GAC

Experimental method

ELECTRON MICROSCOPY

Resolution

4.54 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9H3O|1|A|U|686, 9H3O|1|A|A|792, 9H3O|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3O_004 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.4078

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9H3O|1|A|U|683
9H3O|1|A|G|684
9H3O|1|A|A|685
9H3O|1|A|U|686
9H3O|1|A|C|687
9H3O|1|A|U|688
9H3O|1|A|A|689
*
9H3O|1|A|U|773
9H3O|1|A|G|774
9H3O|1|A|G|775
*
9H3O|1|A|C|791
9H3O|1|A|A|792
9H3O|1|A|A|793
9H3O|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34