J3_9H3O_009

3D structure

PDB id

9H3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-_GAC

Experimental method

ELECTRON MICROSCOPY

Resolution

4.54 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9H3O|1|A|A|2518, 9H3O|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3O_009 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.2941

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9H3O|1|A|C|2517
9H3O|1|A|A|2518
9H3O|1|A|U|2519
9H3O|1|A|C|2520
*
9H3O|1|A|G|2545
9H3O|1|A|U|2546
9H3O|1|A|A|2547
*
9H3O|1|A|U|2561
9H3O|1|A|U|2562
9H3O|1|A|U|2563
9H3O|1|A|A|2564
9H3O|1|A|A|2565
9H3O|1|A|A|2566
9H3O|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL14