J3_9H3P_008

3D structure

PDB id

9H3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

7.06 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3P_008 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.2478

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

9H3P|1|A|U|1344
9H3P|1|A|C|1345
9H3P|1|A|G|1346
9H3P|1|A|A|1347
9H3P|1|A|C|1348
9H3P|1|A|C|1349
*
9H3P|1|A|G|1382
9H3P|1|A|A|1383
9H3P|1|A|A|1384
9H3P|1|A|A|1385
*
9H3P|1|A|U|1402
9H3P|1|A|A|1403

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL23