J3_9H3Q_004

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9H3Q|1|A|U|321, 9H3Q|1|A|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3Q_004 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1757

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9H3Q|1|A|G|297
9H3Q|1|A|G|298
9H3Q|1|A|A|299
9H3Q|1|A|A|300
9H3Q|1|A|G|301
*
9H3Q|1|A|C|316
9H3Q|1|A|G|317
9H3Q|1|A|C|318
9H3Q|1|A|G|319
9H3Q|1|A|A|320
9H3Q|1|A|U|321
9H3Q|1|A|A|322
9H3Q|1|A|C|323
9H3Q|1|A|A|324
9H3Q|1|A|G|325
*
9H3Q|1|A|C|337
9H3Q|1|A|G|338
9H3Q|1|A|U|339
9H3Q|1|A|A|340
9H3Q|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24