J3_9H3R_013

3D structure

PDB id

9H3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9H3R|1|A|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3R_013 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.24

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9H3R|1|A|C|2517
9H3R|1|A|A|2518
9H3R|1|A|U|2519
9H3R|1|A|C|2520
*
9H3R|1|A|G|2545
9H3R|1|A|U|2546
9H3R|1|A|A|2547
*
9H3R|1|A|U|2561
9H3R|1|A|U|2562
9H3R|1|A|U|2563
9H3R|1|A|A|2564
9H3R|1|A|A|2565
9H3R|1|A|A|2566
9H3R|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL14