J3_9H3S_001

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3S_001 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.123

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

9H3S|1|A|G|30
9H3S|1|A|C|31
*
9H3S|1|A|G|474
9H3S|1|A|C|475
9H3S|1|A|G|476
9H3S|1|A|A|477
9H3S|1|A|A|478
9H3S|1|A|A|479
9H3S|1|A|A|480
9H3S|1|A|G|481
*
9H3S|1|A|C|509
9H3S|1|A|C|510

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20

Chain S

Large ribosomal subunit protein uL22

Chain U

Large ribosomal subunit protein uL24