J3_9H3T_004

3D structure

PDB id

9H3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_L2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.85 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9H3T|1|A|U|321, 9H3T|1|A|C|323

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H3T_004 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1577

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9H3T|1|A|G|297
9H3T|1|A|G|298
9H3T|1|A|A|299
9H3T|1|A|A|300
9H3T|1|A|G|301
*
9H3T|1|A|C|316
9H3T|1|A|G|317
9H3T|1|A|C|318
9H3T|1|A|G|319
9H3T|1|A|A|320
9H3T|1|A|U|321
9H3T|1|A|A|322
9H3T|1|A|C|323
9H3T|1|A|A|324
9H3T|1|A|G|325
*
9H3T|1|A|C|337
9H3T|1|A|G|338
9H3T|1|A|U|339
9H3T|1|A|A|340
9H3T|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24