J3_9H4N_025
3D structure
- PDB id
- 9H4N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPL13 (eL13)-mutant 80S ribosome from mouse
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 9H4N|1|B2|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9H4N_025 not in the Motif Atlas
- Geometric match to J3_8QYX_024
- Geometric discrepancy: 0.0502
- The information below is about J3_8QYX_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.3
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9H4N|1|B2|C|9
9H4N|1|B2|C|10
9H4N|1|B2|A|11
9H4N|1|B2|U|12
9H4N|1|B2|A|13
9H4N|1|B2|C|14
*
9H4N|1|B2|G|65
9H4N|1|B2|G|66
*
9H4N|1|B2|U|109
9H4N|1|B2|G|110
Current chains
- Chain B2
- 5S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain D1
- Large ribosomal subunit protein uL16-like
- Chain G2
- Large ribosomal subunit protein uL18
- Chain N2
- Large ribosomal subunit protein eL21
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