J3_9H6I_005
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAGCUUGAAAA*UAG(PSU)CUGGAG*CUACG
- Length
- 26 nucleotides
- Bulged bases
- 9H6I|1|A|A|118, 9H6I|1|A|A|119, 9H6I|1|A|G|154
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6I|1|A|C|111
9H6I|1|A|A|112
9H6I|1|A|G|113
9H6I|1|A|C|114
9H6I|1|A|U|115
9H6I|1|A|U|116
9H6I|1|A|G|117
9H6I|1|A|A|118
9H6I|1|A|A|119
9H6I|1|A|A|120
9H6I|1|A|A|121
*
9H6I|1|A|U|147
9H6I|1|A|A|148
9H6I|1|A|G|149
9H6I|1|A|PSU|150
9H6I|1|A|C|151
9H6I|1|A|U|152
9H6I|1|A|G|153
9H6I|1|A|G|154
9H6I|1|A|A|155
9H6I|1|A|G|156
*
9H6I|1|A|C|260
9H6I|1|A|U|261
9H6I|1|A|A|262
9H6I|1|A|C|263
9H6I|1|A|G|264
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain AG
- Large ribosomal subunit protein eL13z
- Chain AX
- Large ribosomal subunit protein eL36y
- Chain BG
- Large ribosomal subunit protein eL8y
- Chain BP
- Large ribosomal subunit protein uL29x
- Chain Ea
- Large ribosomal subunit protein eL15z
Coloring options: