J3_9H6I_007
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCUAAG*CGCCAGAGAG*CGUCG(PSU)G
- Length
- 23 nucleotides
- Bulged bases
- 9H6I|1|A|G|207
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6I|1|A|C|181
9H6I|1|A|C|182
9H6I|1|A|U|183
9H6I|1|A|A|184
9H6I|1|A|A|185
9H6I|1|A|G|186
*
9H6I|1|A|C|202
9H6I|1|A|G|203
9H6I|1|A|C|204
9H6I|1|A|C|205
9H6I|1|A|A|206
9H6I|1|A|G|207
9H6I|1|A|A|208
9H6I|1|A|G|209
9H6I|1|A|A|210
9H6I|1|A|G|211
*
9H6I|1|A|C|223
9H6I|1|A|G|224
9H6I|1|A|U|225
9H6I|1|A|C|226
9H6I|1|A|G|227
9H6I|1|A|PSU|228
9H6I|1|A|G|229
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BO
- Large ribosomal subunit protein uL24z
- Chain BT
- Large ribosomal subunit protein uL4z
Coloring options: