J3_9H6I_010
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGG*CGUGGUCUGCA*UCCGGG
- Length
- 20 nucleotides
- Bulged bases
- 9H6I|1|A|U|574, 9H6I|1|A|U|576, 9H6I|1|A|C|617
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6I|1|A|C|505
9H6I|1|A|G|506
9H6I|1|A|G|507
*
9H6I|1|A|C|569
9H6I|1|A|G|570
9H6I|1|A|U|571
9H6I|1|A|G|572
9H6I|1|A|G|573
9H6I|1|A|U|574
9H6I|1|A|C|575
9H6I|1|A|U|576
9H6I|1|A|G|577
9H6I|1|A|C|578
9H6I|1|A|A|579
*
9H6I|1|A|U|616
9H6I|1|A|C|617
9H6I|1|A|C|618
9H6I|1|A|G|619
9H6I|1|A|G|620
9H6I|1|A|G|621
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain AQ
- Large ribosomal subunit protein eL28z
- Chain AV
- Large ribosomal subunit protein eL32z
- Chain AW
- Large ribosomal subunit protein eL33y
- Chain BF
- Large ribosomal subunit protein eL6y
- Chain BR
- Ribosomal protein L30/L7 family protein
- Chain BT
- Large ribosomal subunit protein uL4z
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