J3_9H6I_012

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGA(A2M)C(PSU)A*UAG*CGAA

Length

14 nucleotides

Bulged bases

9H6I|1|A|A2M|826, 9H6I|1|A|G|933, 9H6I|1|A|A|934

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|U|823
9H6I|1|A|G|824
9H6I|1|A|A|825
9H6I|1|A|A2M|826
9H6I|1|A|C|827
9H6I|1|A|PSU|828
9H6I|1|A|A|829
*
9H6I|1|A|U|914
9H6I|1|A|A|915
9H6I|1|A|G|916
*
9H6I|1|A|C|932
9H6I|1|A|G|933
9H6I|1|A|A|934
9H6I|1|A|A|935

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AY

Large ribosomal subunit protein eL37z

Chain BA

Large ribosomal subunit protein eL39z/eL39x

Chain BQ

Large ribosomal subunit protein uL2z

Chain Ea

Large ribosomal subunit protein eL15z