J3_9H6I_015

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAGAG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9H6I|1|A|A|1491, 9H6I|1|A|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|C|1488
9H6I|1|A|G|1489
9H6I|1|A|A|1490
9H6I|1|A|A|1491
9H6I|1|A|G|1492
9H6I|1|A|A|1493
9H6I|1|A|G|1494
*
9H6I|1|A|C|1859
9H6I|1|A|A|1860
9H6I|1|A|A|1861
*
9H6I|1|A|U|1873
9H6I|1|A|C|1874
9H6I|1|A|U|1875
9H6I|1|A|G|1876

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AK

Large ribosomal subunit protein eL19x

Chain Fa

Large ribosomal subunit protein eL34z