J3_9H6I_024

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAUC*GUU*ACCA(A2M)UA

Length

14 nucleotides

Bulged bases

9H6I|1|A|A|2886, 9H6I|1|A|U|2887

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|U|2885
9H6I|1|A|A|2886
9H6I|1|A|U|2887
9H6I|1|A|C|2888
*
9H6I|1|A|G|2913
9H6I|1|A|U|2914
9H6I|1|A|U|2915
*
9H6I|1|A|A|2929
9H6I|1|A|C|2930
9H6I|1|A|C|2931
9H6I|1|A|A|2932
9H6I|1|A|A2M|2933
9H6I|1|A|U|2934
9H6I|1|A|A|2935

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain BH

Large ribosomal subunit protein uL13y

Chain BI

Large ribosomal subunit protein uL14x/uL14z/uL14y

Chain BS

Large ribosomal subunit protein uL3z