J3_9H6I_025
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAUUGCCG*CACGUGUCGUUG*CUUGAAUUAUAAUUACCACC
- Length
- 40 nucleotides
- Bulged bases
- 9H6I|1|A|U|3166, 9H6I|1|A|G|3167, 9H6I|1|A|U|3206, 9H6I|1|A|A|3254, 9H6I|1|A|U|3256, 9H6I|1|A|U|3258, 9H6I|1|A|U|3262
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6I|1|A|G|3163
9H6I|1|A|A|3164
9H6I|1|A|U|3165
9H6I|1|A|U|3166
9H6I|1|A|G|3167
9H6I|1|A|C|3168
9H6I|1|A|C|3169
9H6I|1|A|G|3170
*
9H6I|1|A|C|3200
9H6I|1|A|A|3201
9H6I|1|A|C|3202
9H6I|1|A|G|3203
9H6I|1|A|U|3204
9H6I|1|A|G|3205
9H6I|1|A|U|3206
9H6I|1|A|C|3207
9H6I|1|A|G|3208
9H6I|1|A|U|3209
9H6I|1|A|U|3210
9H6I|1|A|G|3211
*
9H6I|1|A|C|3249
9H6I|1|A|U|3250
9H6I|1|A|U|3251
9H6I|1|A|G|3252
9H6I|1|A|A|3253
9H6I|1|A|A|3254
9H6I|1|A|U|3255
9H6I|1|A|U|3256
9H6I|1|A|A|3257
9H6I|1|A|U|3258
9H6I|1|A|A|3259
9H6I|1|A|A|3260
9H6I|1|A|U|3261
9H6I|1|A|U|3262
9H6I|1|A|A|3263
9H6I|1|A|C|3264
9H6I|1|A|C|3265
9H6I|1|A|A|3266
9H6I|1|A|C|3267
9H6I|1|A|C|3268
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain AH
- Large ribosomal subunit protein eL14y
- Chain AW
- Large ribosomal subunit protein eL33y
- Chain BF
- Large ribosomal subunit protein eL6y
- Chain BH
- Large ribosomal subunit protein uL13y
Coloring options: