J3_9H6I_031
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGA*UAACAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 9H6I|1|h1|C|865
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6I|1|h1|U|635
9H6I|1|h1|G|636
9H6I|1|h1|A|637
*
9H6I|1|h1|U|862
9H6I|1|h1|A|863
9H6I|1|h1|A|864
9H6I|1|h1|C|865
9H6I|1|h1|A|866
9H6I|1|h1|G|867
*
9H6I|1|h1|C|963
9H6I|1|h1|A|964
9H6I|1|h1|U|965
9H6I|1|h1|U|966
9H6I|1|h1|A|967
Current chains
- Chain h1
- Ribosomal RNA 18S
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AE
- Small ribosomal subunit protein uS8z/uS8w
- Chain Da
- Small ribosomal subunit protein uS15y
- Chain Na
- Small ribosomal subunit protein eS27y
- Chain Ra
- Small ribosomal subunit protein eS7x
- Chain Va
- Small ribosomal subunit protein uS12y
- Chain Xa
- Small ribosomal subunit protein uS17z
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