J3_9H6I_038

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(OMC)CAGAC*GGGUG*(OMU)UAGAUG

Length

18 nucleotides

Bulged bases

9H6I|1|h1|A|1218, 9H6I|1|h1|G|1448, 9H6I|1|h1|U|1450

QA status

Modified nucleotides: OMC, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|h1|OMC|1216
9H6I|1|h1|C|1217
9H6I|1|h1|A|1218
9H6I|1|h1|G|1219
9H6I|1|h1|A|1220
9H6I|1|h1|C|1221
*
9H6I|1|h1|G|1264
9H6I|1|h1|G|1265
9H6I|1|h1|G|1266
9H6I|1|h1|U|1267
9H6I|1|h1|G|1268
*
9H6I|1|h1|OMU|1445
9H6I|1|h1|U|1446
9H6I|1|h1|A|1447
9H6I|1|h1|G|1448
9H6I|1|h1|A|1449
9H6I|1|h1|U|1450
9H6I|1|h1|G|1451

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AI

Small ribosomal subunit protein eS10z

Chain Ca

Small ribosomal subunit protein uS14z/uS14y/uS14x