J3_9H6I_043

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CACUG*CGUGAUGG*CG(A2M)G

Length

17 nucleotides

Bulged bases

9H6I|1|h1|A|1474, 9H6I|1|h1|U|1476, 9H6I|1|h1|G|1541

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|h1|C|1473
9H6I|1|h1|A|1474
9H6I|1|h1|C|1475
9H6I|1|h1|U|1476
9H6I|1|h1|G|1477
*
9H6I|1|h1|C|1535
9H6I|1|h1|G|1536
9H6I|1|h1|U|1537
9H6I|1|h1|G|1538
9H6I|1|h1|A|1539
9H6I|1|h1|U|1540
9H6I|1|h1|G|1541
9H6I|1|h1|G|1542
*
9H6I|1|h1|C|1573
9H6I|1|h1|G|1574
9H6I|1|h1|A2M|1575
9H6I|1|h1|G|1576

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AD

Small ribosomal subunit protein uS7y

Chain BL

Small ribosomal subunit protein eS19x

Chain La

Small ribosomal subunit protein eS25w

Chain Wa

Small ribosomal subunit protein uS13z/uS13y/uS13x