J3_9H6Y_015
3D structure
- PDB id
- 9H6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 9H6Y|1|2|U|1473
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6Y|1|2|C|1387
9H6Y|1|2|U|1388
9H6Y|1|2|G|1389
9H6Y|1|2|G|1390
9H6Y|1|2|C|1391
*
9H6Y|1|2|G|1446
9H6Y|1|2|G|1447
9H6Y|1|2|A|1448
9H6Y|1|2|C|1449
9H6Y|1|2|A|1450
9H6Y|1|2|A|1451
9H6Y|1|2|G|1452
*
9H6Y|1|2|C|1466
9H6Y|1|2|C|1467
9H6Y|1|2|C|1468
9H6Y|1|2|G|1469
9H6Y|1|2|A|1470
9H6Y|1|2|G|1471
9H6Y|1|2|A|1472
9H6Y|1|2|U|1473
9H6Y|1|2|U|1474
9H6Y|1|2|G|1475
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS3
- Chain H
- Small ribosomal subunit protein uS7
- Chain S
- Small ribosomal subunit protein uS9
- Chain T
- Small ribosomal subunit protein eS17
- Chain W
- Small ribosomal subunit protein uS10
- Chain e
- Small ribosomal subunit protein uS14
- Chain g
- Small ribosomal subunit protein RACK1
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