J3_9H74_003

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

9H74|1|2|U|224, 9H74|1|2|C|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H74|1|2|C|220
9H74|1|2|A|221
9H74|1|2|G|222
9H74|1|2|A|223
9H74|1|2|U|224
9H74|1|2|C|225
9H74|1|2|A|226
9H74|1|2|A|227
9H74|1|2|A|228
9H74|1|2|A|229
9H74|1|2|C|230
9H74|1|2|C|231
9H74|1|2|A|232
9H74|1|2|A|233
9H74|1|2|C|234
9H74|1|2|C|235
*
9H74|1|2|G|274
9H74|1|2|C|275
9H74|1|2|U|276
9H74|1|2|U|277
9H74|1|2|U|278
9H74|1|2|G|279
*
9H74|1|2|C|286
9H74|1|2|U|287
9H74|1|2|A|288
9H74|1|2|G|289

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain I

Small ribosomal subunit protein eS6

Chain K

Small ribosomal subunit protein eS8

Chain N

40S ribosomal protein S11