J3_9H74_012

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9H74|1|2|G|1270, 9H74|1|2|G|1503, 9H74|1|2|U|1505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H74|1|2|C|1268
9H74|1|2|C|1269
9H74|1|2|G|1270
9H74|1|2|G|1271
9H74|1|2|A|1272
9H74|1|2|C|1273
*
9H74|1|2|G|1316
9H74|1|2|G|1317
9H74|1|2|G|1318
9H74|1|2|U|1319
9H74|1|2|G|1320
*
9H74|1|2|U|1500
9H74|1|2|U|1501
9H74|1|2|A|1502
9H74|1|2|G|1503
9H74|1|2|A|1504
9H74|1|2|U|1505
9H74|1|2|G|1506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein eS10

Chain e

40S ribosomal protein S29

Chain f

Ribosomal protein S27a