J3_9H9I_008

3D structure

PDB id

9H9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 2 (HEAD) 30S-IF1-IF3-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

9H9I|1|1|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9H9I_008 not in the Motif Atlas

Geometric match to J3_4LFB_017

Geometric discrepancy: 0.157

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9H9I|1|1|U|1073
9H9I|1|1|G|1074
*
9H9I|1|1|U|1083
9H9I|1|1|G|1084
9H9I|1|1|U|1085
9H9I|1|1|U|1086
*
9H9I|1|1|G|1099
9H9I|1|1|C|1100
9H9I|1|1|A|1101
9H9I|1|1|A|1102

Current chains

Chain 1

16S RNA (head domain)

Nearby chains

Chain B

Small ribosomal subunit protein uS2