3D structure

PDB id
9H9M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex 4 (HEAD) 30S-GE81112 (weak residual tRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
9H9M|1|1|A|975, 9H9M|1|1|G|976, 9H9M|1|1|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9H9M_003 not in the Motif Atlas
Geometric match to J3_4LFB_004
Geometric discrepancy: 0.0832
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

9H9M|1|1|U|955
9H9M|1|1|U|956
9H9M|1|1|U|957
9H9M|1|1|A|958
9H9M|1|1|A|959
9H9M|1|1|U|960
9H9M|1|1|U|961
9H9M|1|1|C|962
*
9H9M|1|1|G|973
9H9M|1|1|A|974
9H9M|1|1|A|975
9H9M|1|1|G|976
9H9M|1|1|A|977
9H9M|1|1|A|978
9H9M|1|1|C|979
9H9M|1|1|C|980
9H9M|1|1|U|981
9H9M|1|1|U|982
9H9M|1|1|A|983
9H9M|1|1|C|984
*
9H9M|1|1|G|1221
9H9M|1|1|G|1222
9H9M|1|1|C|1223
9H9M|1|1|U|1224
9H9M|1|1|A|1225

Current chains

Chain 1
16S RNA (1542-MER)

Nearby chains

Chain J
Small ribosomal subunit protein uS10
Chain M
Small ribosomal subunit protein uS13
Chain N
Small ribosomal subunit protein uS14
Chain S
Small ribosomal subunit protein uS19

Coloring options:


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