J3_9HA1_005

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9HA1|1|A|A|1609, 9HA1|1|A|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9HA1_005 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1774

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

9HA1|1|A|C|1306
9HA1|1|A|A|1307
9HA1|1|A|A|1308
9HA1|1|A|G|1309
*
9HA1|1|A|C|1605
9HA1|1|A|C|1606
9HA1|1|A|C|1607
9HA1|1|A|A|1608
9HA1|1|A|A|1609
9HA1|1|A|A|1610
9HA1|1|A|C|1611
*
9HA1|1|A|G|1620
9HA1|1|A|U|1621
9HA1|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34